Go to JKU Homepage
Institute for Machine Learning
What's that?

Institutes, schools, other departments, and programs create their own web content and menus.

To help you better navigate the site, see here where you are at the moment.

Publications 2012

Conferences

Associating complex traits with rare variants identified by NGS: improving power by a position-dependent kernel approach ASHG
Author(s): Ulrich Bodenhofer, Sepp Hochreiter
Published: Talk at Annual Meeting of the American Society of Human Genetics (ASHG2012), San Francisco, USA, November 6-10, 2012
Abstract: PDF, opens an external URL in a new window
Haplotype clusters of rare variants in Korean genomes ASHG
Author(s): Sepp Hochreiter, Günter Klambauer, Gundula Povysil, Djork-Arné Clevert
Published: Poster at Annual Meeting of the American Society of Human Genetics (ASHG2012), San Francisco, USA, November 6-10, 2012
Abstract: PDF, opens an external URL in a new window
An integrative analysis pinpoints the pathogenesis of autism in the cerebellar vermis ASHG
Author(s): Djork-Arné Clevert, Sepp Hochreiter
Published: Poster at Annual Meeting of the American Society of Human Genetics (ASHG2012), San Francisco, USA, November 6-10, 2012
Abstract: PDF, opens an external URL in a new window
Detection of identity by descent based on rare variants ASHG
Author(s): Gundula Povysil, Günter Klambauer, Sepp Hochreiter
Published: Poster at Annual Meeting of the American Society of Human Genetics (ASHG2012), San Francisco, USA, November 6-10, 2012
Abstract: PDF, opens an external URL in a new window
CNV detection from exome sequencing data using a generative probabilistic model HGV
Author(s): Günter Klambauer, Sepp Hochreiter
Published: Talk at 13th International Meeting on Human Genome Variation and Complex Genome Analysis (HGV2012), Shanghai, China, September 6-8, 2012
Abstract: PDF, opens an external URL in a new window
Identification of Short and Rare Haplotype Clusters in Korean Genomes HGV
Author(s): Sepp Hochreiter, Günter Klambauer, Gundula Povysil, Djork-Arné Clevert
Published: Poster at 13th International Meeting on Human Genome Variation and Complex Genome Analysis (HGV2012), Shanghai, China, September 6-8, 2012
Abstract: PDF, opens an external URL in a new window
Improving the Power of Rare-Variant Association Tests by a Position-Dependent Kernel Approach HGV Identifying IBD tracts that are tagged by rare variants HGV
Author(s): Gundula Povysil, Sepp Hochreiter
Published: Poster at 13th International Meeting on Human Genome Variation and Complex Genome Analysis (HGV2012), Shanghai, China, September 6-8, 2012
Abstract: PDF, opens an external URL in a new window
CNV-analysis locates ASD’s pathogenesis in the cerebellar vermis HGV
Author(s): Sepp Hochreiter, Djork-Arné Clevert
Published: Poster at 13th International Meeting on Human Genome Variation and Complex Genome Analysis (HGV2012), Shanghai, China, September 6-8, 2012
Abstract: PDF, opens an external URL in a new window
Rare Haplotypes in the Korean Population CAMDA
Author(s): Sepp Hochreiter, Günter Klambauer, Gundula Povysil, Djork-Arné Clevert
Published: CAMDA 2012, Satellite Meeting of ISMB/ECCB 2012, Long Beach CA, USA, July 13-14, 2012
Abstract: PDF, opens an external URL in a new window
Exploiting the Japanese Toxicogenomics Project for Predictive Modelling of Drug Toxicity CAMDA
Author(s): Djork-Arné Clevert, Martin Heusel, Andreas Mitterecker, Willem Talloen, Hinrich Göhlmann, Jörg Wegner, Andreas Mayr, Günter Klambauer, Sepp Hochreiter
Published: CAMDA 2012, Satellite Meeting of ISMB/ECCB 2012, Long Beach CA, USA, July 13-14, 2012
Abstract: PDF, opens an external URL in a new window
Increasing the Discovery Power of -Omics Studies CAMDA
Author(s): Djork-Arné Clevert, Andreas Mayr, Günter Klambauer, Andreas Mitterecker, Armand Valsesia, Marianne Tuefferd, Karl Forner, Willem Talloen, Jérôme Wojcik, Hinrich Göhlmann, Sepp Hochreiter
Published: CAMDA 2011, Satellite Meeting of ISMB/ECCB 2011, Vienna, July 15-16, 2011 (to appear 2012)
PDF: PDF, opens an external URL in a new window

Books/Book Chapters

δ-Clustering of Monotone Profiles Use R!, Modeling Dose-Response Microarray Data in Early Drug Development Experiments Using R
Author(s): Adetayo Kasim, Suzy Van Sanden, Martin Otava, Sepp Hochreiter, Djork-Arné Clevert, Willem Talloen, Dan Lin
Editor(s): Dan Lin, Ziv Shkedy, Daniel Yekutieli, Dhammika Amaratunga, Luc Bijnens
Published: Use R!, Modeling Dose-Response Microarray Data in Early Drug Development Experiments Using R, 2012, Part 2, pp. 135-149, 
doi: 10.1007/978-3-642-24007-2_9, opens an external URL in a new window

Publications (non-peer-reviewed)

FABIA: Biclustering in Drugdesign ISMB
Author(s): Martin Heusel, Djork-Arné Clevert, Gundula Povysil, Günter Klambauer, Ulrich Bodenhofer, Andreas Mayr, Andreas Mitterecker, Adetayo Kasim, Tatsiana Khamiakova, Suzy Van Sanden, Dan Lin, Willem Talloen, Hinrich W.H. Göhlmann, Luc Bijnens, Ziv Shkedy, Sepp Hochreiter
Published: Poster at 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, USA, July 15 - July 17 2012
Detecting rare copy number variations (CNVs) with sparse coding on FF and FFPE ISMB
Author(s): Andreas Mitterecker, Djork-Arné Clevert, Andreas Mayr, Armand Valsesia, Karl Forner, Willem Talloen, Hinrich W.H. Göhlmann, Sepp Hochreiter
Published: Poster at 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, USA, July 15 - July 17 2012
Detecting copy-number aberrations with a low false discovery rate ISMB
Author(s): Djork-Arné Clevert, Andreas Mitterecker, Andreas Mayr, Günter Klambauer, Marianne Tuefferd, An De Bondt, Willem Talloen, Hinrich W.H. Göhlmann, Luc Bijnens, Ziv Shkedy, Sepp Hochreiter
Published: Poster at 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, USA, July 15 - July 17 2012
Comparing methods detecting differentially expressed genes in RNA-seq data ISMB
Author(s): Thomas Unterthiner, Günter Klambauer, Sepp Hochreiter
Published: Poster at 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, USA, July 15 - July 17 2012
Genome-Wide Chromatin Remodeling Identified at GC-Rich Long Nucleosome-Free Regions ISMB
Author(s): Ulrich Bodenhofer, Karin Schwarzbauer, Sepp Hochreiter
Published: Poster at 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, USA, July 15 - July 17 2012
cn.MOPS: mixture of Poissons for discovering copy number variations in next generation sequencing data with a low false discovery rate ISMB
Author(s): Günter Klambauer, Karin Schwarzbauer, Andreas Mayr, Djork-Arné Clevert, Andreas Mitterecker, Ulrich Bodenhofer, Sepp Hochreiter
Published: Talk at 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, USA, July 15 - July 17 2012
Comparison of IBD detection methods with a focus on rare variants ISMB
Author(s): Gundula Povysil, Günter Klambauer, Sepp Hochreiter
Published: Poster at 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, USA, July 15 - July 17 2012
Spindle organization is regulated nonlinearly ISMB
Author(s): Andreas Mayr, Djork-Arné Clevert, Sepp Hochreiter
Published: Poster at 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, USA, July 15 - July 17 2012
Copy number aberrations affecting adhesion genes involved in the development of the cerebellar vermis are associated with autism spectrum disorders ISMB
Author(s): Sepp Hochreiter, Djork-Arné Clevert
Published: Poster at 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, USA, July 15 - July 17 2012

Theses

Clustering of [Ca²⁺]ᵢ Traces for Studying Calcium Signaling on a Single-cell Level Master Thesis
Author(s): Christoph Ogris
Published: Master Thesis, December 2012 
Evaluating RNA-seq Methods for Differential Gene Expression Master Thesis
Author(s): Thomas Unterthiner
Published: Master Thesis, July 2012 
Detection of Copy Number Variations on Microarray Data Master Thesis
Author(s): Andreas Mitterecker
Published: Master Thesis, May 2012
An R package for the visualization of the results of projection methods with applications in bioinformatics Master Thesis
Author(s): Andrea Salfinger
Published: Master Thesis, May 2012