Genome-wide_.chromatin remodeling identified at GC-rich long nucleosome-free regions _{PLoS ONE 7}

Author(s):	Karin Schwarzbauer, Ulrich Bodenhofer, Sepp Hochreiter
Published:	PLoS ONE 7(11): e47924, 2012, doi:10.1371/journal.pone.0047924, opens an external URL in a new window
Download:	Abstract/Full Text, opens an external URL in a new window

cn.MOPS: mixture of Poissons for discovering copy number variations in next generation sequencing data with a low false discovery rate _{Nucl. Acids Res.}

Author(s):	Günter Klambauer, Karin Schwarzbauer, Andreas Mayr, Djork-Arné Clevert, Andreas Mitterecker, Ulrich Bodenhofer, Sepp Hochreiter
Published:	Nucl. Acids Res., 40(9):e69, 2012, doi:10.1093/nar/gks003, opens an external URL in a new window
Download:	Full Text, opens an external URL in a new window
Software:	cn.MOPS, opens an external URL in a new window

Associating complex traits with rare variants identified by NGS: improving power by a position-dependent kernel approach _ASHG

Author(s):	Ulrich Bodenhofer, Sepp Hochreiter
Published:	Talk at Annual Meeting of the American Society of Human Genetics (ASHG2012), San Francisco, USA, November 6-10, 2012
Abstract:	PDF, opens an external URL in a new window

Haplotype clusters of rare variants in Korean genomes _ASHG

Author(s):	Sepp Hochreiter, Günter Klambauer, Gundula Povysil, Djork-Arné Clevert
Published:	Poster at Annual Meeting of the American Society of Human Genetics (ASHG2012), San Francisco, USA, November 6-10, 2012
Abstract:	PDF, opens an external URL in a new window

An integrative analysis pinpoints the pathogenesis of autism in the cerebellar vermis _ASHG

Author(s):	Djork-Arné Clevert, Sepp Hochreiter
Published:	Poster at Annual Meeting of the American Society of Human Genetics (ASHG2012), San Francisco, USA, November 6-10, 2012
Abstract:	PDF, opens an external URL in a new window

Detection of identity by descent based on rare variants _ASHG

Author(s):	Gundula Povysil, Günter Klambauer, Sepp Hochreiter
Published:	Poster at Annual Meeting of the American Society of Human Genetics (ASHG2012), San Francisco, USA, November 6-10, 2012
Abstract:	PDF, opens an external URL in a new window

CNV detection from exome sequencing data using a generative probabilistic model _HGV

Author(s):	Günter Klambauer, Sepp Hochreiter
Published:	Talk at 13th International Meeting on Human Genome Variation and Complex Genome Analysis (HGV2012), Shanghai, China, September 6-8, 2012
Abstract:	PDF, opens an external URL in a new window

Identification of Short and Rare Haplotype Clusters in Korean Genomes _HGV

Author(s):	Sepp Hochreiter, Günter Klambauer, Gundula Povysil, Djork-Arné Clevert
Published:	Poster at 13th International Meeting on Human Genome Variation and Complex Genome Analysis (HGV2012), Shanghai, China, September 6-8, 2012
Abstract:	PDF, opens an external URL in a new window

Improving the Power of Rare-Variant Association Tests by a Position-Dependent Kernel Approach _HGV

Author(s):	Ulrich Bodenhofer, Sepp Hochreiter
Published:	Poster at 13th International Meeting on Human Genome Variation and Complex Genome Analysis (HGV2012), Shanghai, China, September 6-8, 2012 (Best Poster Award (JPG), opens an external URL in a new window)
Abstract:	PDF, opens an external URL in a new window

Identifying IBD tracts that are tagged by rare variants _HGV

Author(s):	Gundula Povysil, Sepp Hochreiter
Published:	Poster at 13th International Meeting on Human Genome Variation and Complex Genome Analysis (HGV2012), Shanghai, China, September 6-8, 2012
Abstract:	PDF, opens an external URL in a new window

CNV-analysis locates ASD’s pathogenesis in the cerebellar vermis _HGV

Author(s):	Sepp Hochreiter, Djork-Arné Clevert
Published:	Poster at 13th International Meeting on Human Genome Variation and Complex Genome Analysis (HGV2012), Shanghai, China, September 6-8, 2012
Abstract:	PDF, opens an external URL in a new window

Rare Haplotypes in the Korean Population _CAMDA

Author(s):	Sepp Hochreiter, Günter Klambauer, Gundula Povysil, Djork-Arné Clevert
Published:	CAMDA 2012, Satellite Meeting of ISMB/ECCB 2012, Long Beach CA, USA, July 13-14, 2012
Abstract:	PDF, opens an external URL in a new window

Exploiting the Japanese Toxicogenomics Project for Predictive Modelling of Drug Toxicity _CAMDA

Author(s):	Djork-Arné Clevert, Martin Heusel, Andreas Mitterecker, Willem Talloen, Hinrich Göhlmann, Jörg Wegner, Andreas Mayr, Günter Klambauer, Sepp Hochreiter
Published:	CAMDA 2012, Satellite Meeting of ISMB/ECCB 2012, Long Beach CA, USA, July 13-14, 2012
Abstract:	PDF, opens an external URL in a new window

Increasing the Discovery Power of -Omics Studies CAMDA

Author(s):	Djork-Arné Clevert, Andreas Mayr, Günter Klambauer, Andreas Mitterecker, Armand Valsesia, Marianne Tuefferd, Karl Forner, Willem Talloen, Jérôme Wojcik, Hinrich Göhlmann, Sepp Hochreiter
Published:	CAMDA 2011, Satellite Meeting of ISMB/ECCB 2011, Vienna, July 15-16, 2011 (to appear 2012)
PDF:	PDF, opens an external URL in a new window

δ-Clustering of Monotone Profiles _{Use R!, Modeling Dose-Response Microarray Data in Early Drug Development Experiments Using R}

Author(s):	Adetayo Kasim, Suzy Van Sanden, Martin Otava, Sepp Hochreiter, Djork-Arné Clevert, Willem Talloen, Dan Lin
Editor(s):	Dan Lin, Ziv Shkedy, Daniel Yekutieli, Dhammika Amaratunga, Luc Bijnens
Published:	Use R!, Modeling Dose-Response Microarray Data in Early Drug Development Experiments Using R, 2012, Part 2, pp. 135-149,  doi: 10.1007/978-3-642-24007-2_9, opens an external URL in a new window

FABIA: Biclustering in Drugdesign _ISMB

Author(s):	Martin Heusel, Djork-Arné Clevert, Gundula Povysil, Günter Klambauer, Ulrich Bodenhofer, Andreas Mayr, Andreas Mitterecker, Adetayo Kasim, Tatsiana Khamiakova, Suzy Van Sanden, Dan Lin, Willem Talloen, Hinrich W.H. Göhlmann, Luc Bijnens, Ziv Shkedy, Sepp Hochreiter
Published:	Poster at 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, USA, July 15 - July 17 2012

Detecting rare copy number variations (CNVs) with sparse coding on FF and FFPE _ISMB

Author(s):	Andreas Mitterecker, Djork-Arné Clevert, Andreas Mayr, Armand Valsesia, Karl Forner, Willem Talloen, Hinrich W.H. Göhlmann, Sepp Hochreiter
Published:	Poster at 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, USA, July 15 - July 17 2012

Detecting copy-number aberrations with a low false discovery rate _ISMB

Author(s):	Djork-Arné Clevert, Andreas Mitterecker, Andreas Mayr, Günter Klambauer, Marianne Tuefferd, An De Bondt, Willem Talloen, Hinrich W.H. Göhlmann, Luc Bijnens, Ziv Shkedy, Sepp Hochreiter
Published:	Poster at 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, USA, July 15 - July 17 2012

Comparing methods detecting differentially expressed genes in RNA-seq data _ISMB

Author(s):	Thomas Unterthiner, Günter Klambauer, Sepp Hochreiter
Published:	Poster at 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, USA, July 15 - July 17 2012

Genome-Wide Chromatin Remodeling Identified at GC-Rich Long Nucleosome-Free Regions _ISMB

Author(s):	Ulrich Bodenhofer, Karin Schwarzbauer, Sepp Hochreiter
Published:	Poster at 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, USA, July 15 - July 17 2012

cn.MOPS: mixture of Poissons for discovering copy number variations in next generation sequencing data with a low false discovery rate _ISMB

Author(s):	Günter Klambauer, Karin Schwarzbauer, Andreas Mayr, Djork-Arné Clevert, Andreas Mitterecker, Ulrich Bodenhofer, Sepp Hochreiter
Published:	Talk at 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, USA, July 15 - July 17 2012

Comparison of IBD detection methods with a focus on rare variants _ISMB

Author(s):	Gundula Povysil, Günter Klambauer, Sepp Hochreiter
Published:	Poster at 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, USA, July 15 - July 17 2012

Spindle organization is regulated nonlinearly _ISMB

Author(s):	Andreas Mayr, Djork-Arné Clevert, Sepp Hochreiter
Published:	Poster at 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, USA, July 15 - July 17 2012

Copy number aberrations affecting adhesion genes involved in the development of the cerebellar vermis are associated with autism spectrum disorders _ISMB

Author(s):	Sepp Hochreiter, Djork-Arné Clevert
Published:	Poster at 20th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA, USA, July 15 - July 17 2012

Clustering of [Ca²⁺]ᵢ Traces for Studying Calcium Signaling on a Single-cell Level _{Master Thesis}

Author(s):	Christoph Ogris
Published:	Master Thesis, December 2012

Evaluating RNA-seq Methods for Differential Gene Expression _{Master Thesis}

Author(s):	Thomas Unterthiner
Published:	Master Thesis, July 2012

Detection of Copy Number Variations on Microarray Data _{Master Thesis}

Author(s):	Andreas Mitterecker
Published:	Master Thesis, May 2012

An R package for the visualization of the results of projection methods with applications in bioinformatics _{Master Thesis}

Author(s):	Andrea Salfinger
Published:	Master Thesis, May 2012