Go to JKU Homepage
Institute for Machine Learning
What's that?

Institutes, schools, other departments, and programs create their own web content and menus.

To help you better navigate the site, see here where you are at the moment.

Publications 2014

Journals

Assessing Technical Performance in Differential Gene Expression Experiments with External Spike-in RNA Control Ratio Mixtures Nature Communications 5
Author(s): Sarah A. Munro, Steven P. Lund, P. Scott Pine, Hans Binder, Djork-Arné Clevert, Ana Conesa, Joaquin Dopazo, Mario Fasold, Sepp Hochreiter, Huixiao Hong, Nedereh Jafari, David P. Kreil, Pawel P. Labaj, Sheng Li, Yang Liao, Simon M. Lin, Joseph Meehan, Christopher E. Mason, Javier Santoyo-Lopez, Robert A. Setterquist, Leming Shi, Wei Shi, Gordon K. Smyth, Nancy Stralis-Pavese, Zhenqiang Su, Weida Tong, Charles Wang, Jian Wang, Joshua Xu, Zhan Ye, Yong Yang, Ying Yu, Marc Salit
Published: Nature Communications 5, Article number: 5125, 25 September 2014 doi:10.1038/ncomms6125, opens an external URL in a new window
Download: Draft Version arXiv, opens an external URL in a new window
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium Nature Biotechnology Furby: fuzzy force-directed bicluster visualization BMC Bioinformatics Lck Mediates Signal Transmission from CD59 to the 1 TCR/CD3 Pathway in Jurkat T Cells PLoS ONE

Conferences


Multi-Task Deep Networks for Drug Target Prediction NIPS
Author(s): Thomas Unterthiner, Andreas Mayr, Günter Klambauer, Marvin Steijaert, Hugo Ceulemans, Jörg Wegner, Sepp Hochreiter
Published: Conference Neural Information Processing Systems Foundation (NIPS 2014), Workshop on Transfer and Multi-task Learning, Montreal, Canada, December 8-13, 2014
Downdload: PDF, opens an external URL in a new window
Deep Learning for Drug Target Prediction NIPS
Author(s): Thomas Unterthiner, Andreas Mayr, Günter Klambauer, Marvin Steijaert, Hugo Ceulemans, Jörg Wegner, Sepp Hochreiter
Published: Conference Neural Information Processing Systems Foundation (NIPS 2014), Workshop on Representation and Learning Methods for Complex Outputs, Montreal, Canada, December 8-13, 2014
Downdload: PDF, opens an external URL in a new window
Aiding Drug Design with Deep Neural Networks NIPS
Author(s): Thomas Unterthiner, Andreas Mayr, Günter Klambauer, Marvin Steijaert, Jörg Wegner, Hugo Ceulemans, Sepp Hochreiter
Published: Conference Neural Information Processing Systems Foundation (NIPS 2014), Workshop on Machine Learning in Computational Biology, Montreal, Canada, December 8-13, 2014
Downdload: PDF, opens an external URL in a new window
Deep Learning as an Opportunity in Virtual Screening NIPS
Author(s): Thomas Unterthiner, Andreas Mayr, Günter Klambauer, Marvin Steijaert, Jörg Wegner, Hugo Ceulemans, Sepp Hochreiter
Published: Conference Neural Information Processing Systems Foundation (NIPS 2014), Workshop on Machine Learning for Clinical Data Analysis, Healthcare and Genomics, Montreal, Canada, December 8-13, 2014
Downdload: PDF, opens an external URL in a new window
Rectified Factor Networks and Dropout NIPS
Author(s): Djork-Arné Clevert, Thomas Unterthiner, Sepp Hochreiter
Published: Conference Neural Information Processing Systems Foundation (NIPS 2014), Workshop on Deep Learning and Representation Learning, Montreal, Canada, December 8-13, 2014
Downdload: PDF, opens an external URL in a new window
Deep Learning as an Opportunity in Virtual Screening NIPS
Author(s): Thomas Unterthiner, Andreas Mayr, Günter Klambauer, Marvin Steijaert, Jörg Wegner, Hugo Ceulemans, Sepp Hochreiter
Published: Conference Neural Information Processing Systems Foundation (NIPS 2014), Workshop on Deep Learning and Representation Learning, Montreal, Canada, December 8-13, 2014
Downdload: PDF, opens an external URL in a new window
Utilizing Private Variants in Large Genome-Wide Association Studies: Issues, Techniques, Experiences ASHG 
Author(s): Ulrich Bodenhofer, Sepp Hochreiter
Published: Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2014), San Diego, USA, October 18-22, 2014
Abstract: PDF, opens an external URL in a new window
Detection of Copy Number Variations in Cancer Genomes from High Throughput Sequencing Data ASHG
Author(s): Günter Klambauer, Sepp Hochreiter
Published: Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2014), San Diego, USA, October 18-22, 2014
Abstract: PDF, opens an external URL in a new window
Population specific patterns of novel haplotype groups at the PAH locus ASHG
Author(s): Gundula Povysil, Stefanie Wieser, Sepp Hochreiter, Johannes Zschocke
Published: Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2014), San Diego, USA, October 18-22, 2014
Abstract: PDF, opens an external URL in a new window
Identity by descent between humans, Denisovans, and Neandertals ASHG
Author(s): Sepp Hochreiter, Gundula Povysil
Published: Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2014), San Diego, USA, October 18-22, 2014
Abstract: PDF, opens an external URL in a new window
A Cloud-based GWAS Analysis Pipeline for Clinical Researchers CLOSER
Author(s): Paul Heinzlreiter, James Richard Perkins, Oscar Torreno, Johan Karlsson, Juan Antonio Ranea, Andreas Mitterecker, Miguel Blanca, Oswaldo Trelles
Published: Proc. of the 4th International Conference on Cloud Computing and Services Science (CLOSER 2014), ISBN 978-989-758-019-2, Barcelona, Spain, pp. 387-394, April 2014, doi:10.5220/0004802103870394, opens an external URL in a new window

Publications (non-peer-reviewed)

FABIA: A Probabilistic Model for Biclustering and its Application to Analyzing Big Data in Drug Design ISMB
Author(s): Djork-Arné Clevert, Günter Klambauer, Andreas Mayr, Andreas Mitterecker, Sepp Hochreiter
Published: Poster at 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, USA, July 11 - July 15 2014
Detecting biomarkers on label-free mass spectrometry data using biclustering ISMB
Author(s): Andreas Mitterecker, Djork-Arné Clevert, Sepp Hochreiter
Published: Poster at 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, USA, July 11 - July 15 2014
Identifying Differential Expression in RNA-Seq Studies with Unknown Conditions ISMB
Author(s): Thomas Unterthiner, Günter Klambauer, Sepp Hochreiter
Published: Poster at 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, USA, July 11 - July 15 2014
DeepSAR: Drug Target Prediction using Deep Learning ISMB
Author(s): Andreas Mayr, Alexander Pfaffinger, Thomas Unterthiner, Günter Klambauer, Marvin Steijaert, Jörg K. Wegner, Hugo Ceulemans, Sepp Hochreiter
Published: Poster at 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, USA, July 11 - July 15 2014
Sharing of Very Short IBD Segments between Humans, Neandertals, and Denisovans bioRxiv

Theses