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Institute for Machine Learning
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Publikcations 2015

Journals

msa: an R package for multiple sequence alignment Bioinformatics Prediction of human population responses to toxic compounds by a collaborative competition Nature Biotechnology
Author(s): Federica Eduati, Lara M Mangravite, Tao Wang, Hao Tang, ... , Sepp Hochreiter, Günter Klambauer, Andreas Mayr, ... , Ivan Rusyn, Fred A Wright, Gustavo Stolovitzky, Yang Xie, Julio Saez-Rodriguez
Published: Nature Biotechnology, 33(9):933-940, 2015 doi:10.1038/nbt.3299, opens an external URL in a new window
Rchemcpp: a web service for structural analoging in ChEMBL, Drugbank and the Connectivity Map Bioinformatics KeBABS: an R package for kernel-based analysis of biological sequences Bioinformatics Using transcriptomics to guide lead optimization in drug discovery projects Drug Discovery Today Connecting gene expression data from connectivity map and in silico target predictions for small molecule mechanism-of-action analysis Mol. BioSyst. Graded dominance and related graded properties of fuzzy connectives Fuzzy Sets and Systems

Conferences

ELU-Networks - Fast and Accurate CNN Learning on ImageNet ICCV
Author(s): Martin Heusel, Djork-Arné Clevert, Günter Klambauer, Andreas Mayr, Karin Schwarzbauer, Thomas Unterthiner, Sepp Hochreiter
Published: Poster at International Conference on Computer Vision (ICCV 2015), Santiago, Chile, December 13-16, 2015
Downdload: PDF, opens an external URL in a new window
Rectified Factor Networks NIPS panelcn. MOPS reaches clinical standards as a CNV detection tool for targeted panel sequencing data ASHG
Author(s): Verena Haunschmid, Gundula Povysil, Julia Vogt, Katharina Wimmer, Günter Klambauer, Sepp Hochreiter
Published: Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2015), Baltimore, USA, October 6-10, 2015
Abstract: PDF, opens an external URL in a new window
KeBABS: an R/Bioconductor package for kernel-based analysis of biological sequences ASHG
Author(s): Johannes Palme, Sepp Hochreiter, Ulrich Bodenhofer
Published: Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2015), Baltimore, USA, October 6-10, 2015
Abstract: PDF, opens an external URL in a new window
PODKAT: a software package implementing the position-dependent kernel association test ASHG
Author(s): Ulrich Bodenhofer, Sepp Hochreiter
Published: Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2015), Baltimore, USA, October 6-10, 2015
Abstract: PDF, opens an external URL in a new window
Early Interbreeding between Ancestors of Humans, Neandertals, and Denisovans within Africa SMBE 
Author(s): Gundula Povysil, Sepp Hochreiter
Published: Poster at Annual Meeting of the Society for Molecular Biology and Evolution (SMBE 2015), Vienna, Austria, July 12-16, 2015
Abstract: PDF, opens an external URL in a new window

Publications (non-peer-reviewed)

Toxicity Prediction using Deep Learning arXiv.org Rectified Factor Networks arXiv.org