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Publikationen 2010

Zeitschriften

Continuity issues of the implicational interpretation of fuzzy rules Fuzzy Sets and Systems

Author(s): Martin Stepnicka, Ulrich Bodenhofer, Martina Dankova, Vilem Novak
Published: Fuzzy Sets and Systems, 161(14):1959-1972, 2010
Download: doi:10.1016/j.fss.2010.03.009

Filtering data from high-throughput experiments based on measurement reliability PNAS

Author(s): Willem Talloen, Sepp Hochreiter, Luc Bijnens, Adetayo Kasim, Ziv Shkedy, Dhammika Amaratunga, Hinrich W.H. Göhlmann
Published: National Academy of Sciences of the United States of America, 107(46): E173-E174, 2010
doi:10.1073/pnas.1010604107
Download: PDF

FABIA: Factor Analysis for Bicluster Acquisition Bioinformatics

Author(s): Sepp Hochreiter, Ulrich Bodenhofer, Martin Heusel, Andreas Mayr, Andreas Mitterecker, Adetayo Kasim, Tatsiana Khamiakova, Suzy Van Sanden, Dan Lin, Willem Talloen, Luc Bijnens, Hinrich H.W. Göhlmann, Ziv Shkedy, Djork-Arné Clevert
Published: Bioinformatics, 26(12):1520-1527, 2010
doi:10.1093/bioinformatics/btq227 (PDF, 2.5 MB)
Abstract: HTML
Supplementary
material:
PDF (11 MB)
Software: FABIA

Ten Simple Rules for Organizing a Virtual Conference — Anywhere PLoS Comput Biol 6

Author(s): Nelson N. Gichora, Segun A. Fatumo, Mtakai V. Ngara, Noura Chelbat, Kavisha Ramdayal, Kenneth B. Opap, Geoffrey H. Siwo, Marion O. Adebiyi, Amina El Gonnouni, Denis Zofou, Amal A. M. Maurady, Ezekiel F. Adebiyi, Etienne P. de Villiers, Daniel K. Masiga, Jeffrey W. Bizzaro, Prashanth Suravajhala, Sheila C. Ommeh, Winston Hide
Published: PLoS Comput Biol 6(2): e1000650, 2010. doi:10.1371/journal.pcbi.1000650 

Informative or Noninformative Calls for Gene Expression: A Latent Variable Approach Stat. Appl. Genet. Mol.

Author(s): Adetayo Kasim, Dan Lin, Suzy Van Sanden, Djork-Arné Clevert, Luc Bijnens, Hinrich Göhlmann, Dhammika Amaratunga, Sepp Hochreiter, Ziv Shkedy, Willem Talloen
Published: Statistical Applications in Genetics and Molecular Biology, Vol. 9(1), Article 4, 2010. doi: 10.2202/1544-6115.1460
Download: PDF

Konferenzen

On a graded notion of t-norm and dominance IEEE Int. Symp. on Multiple-Valued Logic

Author(s): Libor Behounek, Petr Cintula, Ulrich Bodenhofer, Susanne Saminger-Platz, Peter Sarkoci
Published: Proc. 40th IEEE Int. Symp. on Multiple-Valued Logic, pp. 73-78. IEEE Computer Society, 2010
doi: 10.1109/ISMVL.2010.21

Publikationen (non-peer-reviewed)

Decoding Sequence Classification Models for Acquiring New Biological Insights ISMB

Author(s): Ulrich Bodenhofer, Andreas Kothmeier, Ingrid Abfalter, Carsten Mahrenholz, Sepp Hochreiter
Published: Poster at 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, MA USA, July 11 - July 13 2010
Download: Abstract

Identification of non reliable probes on customized Affymetrix Mouse430_2 platform ISMB

Author(s): Noura Chelbat, Adetayo Kasim, Ulrich Bodenhofer, Willem Talloen, Sepp Hochreiter, Ziv Shkedy
Published: Poster at 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, MA USA, July 11 - July 13 2010
Download: Abstract (PDF) - Poster (PDF)

cn.FARMS: a probabilistic model to detect DNA copy numbers ISMB

Author(s): Djork-Arné Clevert, Andreas Mitterecker, Andreas Mayr, Robert Burger, An de Bondt, Marianne Tuefferd, Willem Talloen, Hinrich Göhlmann, Sepp Hochreiter
Published: Poster at 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, MA USA, July 11 - July 13 2010
Download: Abstract

FABIA: Factor Analysis for Bicluster Acquisition ISMB

Author(s): Sepp Hochreiter, Ulrich Bodenhofer, Martin Heusel, Andreas Mayr, Andreas Mitterecker, Adetayo Kasim, Tatsiana Khamiakova, Suzy Van Sanden, Dan Lin, Willem Talloen, Luc Bijnens, Hinrich W.H. Göhlmann, Ziv Shkedy, Djork-Arné Clevert
Published: Poster at 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, MA USA, July 11 - July 13 2010
Download: Abstract (PDF) - Poster (PDF)

A Normalization Technique for Next Generation Sequencing Experiments ISMB

Author(s): Günter Klambauer, Karin Schwarzbauer, Andreas Mayr, Sepp Hochreiter
Published: Poster at 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, MA USA, July 11 - July 13 2010
Download: Abstract

PrOCoil - Advances in Predicting Two- and Three-stranded Coiled Coils ISMB

Author(s): Carsten Mahrenholz, Ingrid Abfalter, Ulrich Bodenhofer, Rudolf Volkmer, Sepp Hochreiter
Published: Poster at 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, MA USA, July 11 - July 13 2010
Download: Abstract

Detection of Nonlinear Effects in Gene Expression Pathways ISMB

Author(s): Andreas Mayr, Djork-Arné Clevert, Sepp Hochreiter
Published: Poster at 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, MA USA, July 11 - July 13 2010
Download: Abstract

Detecting rare copy number variations (CNVs) with sparse coding ISMB

Author(s): Andreas Mitterecker, Djork-Arné Clevert, Andreas Mayr, An De Bondt, Willem Talloen, Hinrich Göhlmann, Sepp Hochreiter
Published: Poster at 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, MA USA, July 11 - July 13 2010
Download: Abstract (PDF) - Poster (PDF)

Identifying Copy Number Variations based on Next Generation Sequencing Data by a Mixture of Poisson Model ISMB

Author(s): Karin Schwarzbauer, Günter Klambauer, Andreas Mayr, Sepp Hochreiter
Published: Poster at 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, MA USA, July 11 - July 13 2010
Download: Abstract