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Publikationen 2015

Zeitschriften

msa: an R package for multiple sequence alignment Bioinformatics

Author(s): Ulrich Bodenhofer, Enrico Bonatesta, Christoph Kainrath, Sepp Hochreiter
Published: Bioinformatics, 31(24):3997-3999, 2015 
doi:10.1093/bioinformatics/btv494
Download: PDF

Prediction of human population responses to toxic compounds by a collaborative competition Nature Biotechnology

Author(s): Federica Eduati, Lara M Mangravite, Tao Wang, Hao Tang, ... , Sepp Hochreiter, Günter Klambauer, Andreas Mayr, ... , Ivan Rusyn, Fred A Wright, Gustavo Stolovitzky, Yang Xie, Julio Saez-Rodriguez
Published: Nature Biotechnology, 33(9):933-940, 2015 doi:10.1038/nbt.3299

Rchemcpp: a web service for structural analoging in ChEMBL, Drugbank and the Connectivity Map Bioinformatics

Author(s): Günter Klambauer, Martin Wischenbart, Michael Mahr, Thomas Unterthiner, Andreas Mayr, Sepp Hochreiter
Published: Bioinformatics, 31(20):3392-3394, 2015 doi:10.1093/bioinformatics/btv373
Download: PDF

KeBABS: an R package for kernel-based analysis of biological sequences Bioinformatics

Using transcriptomics to guide lead optimization in drug discovery projects Drug Discovery Today

Author(s): Bie Verbist, Günter Klambauer, Liesbet Vervoort, Willem Talloen, QSTAR Consortium, Ziv Shkedy, Olivier Thas, Andreas Bender, Hinrich W.H. Göhlmann, Sepp Hochreiter
Published: Drug Discovery Today, 20(5):505-513, 2015 doi:10.1016/j.drudis.2014.12.014

Connecting gene expression data from connectivity map and in silico target predictions for small molecule mechanism-of-action analysis Mol. BioSyst.

Author(s): Aakash Chavan Ravindranath, Nolen Perualila-Tan, Adetayo Kasim, Georgios Drakakis, Sonia Liggi, Suzanne C. Brewerton, Daniel Mason, Michael J. Bodkin, David A. Evans, Aditya Bhagwat, Willem Talloen, Hinrich W. H. Göhlmann, QSTAR Consortium, Ziv Shkedy, Andreas Bender
Published: Mol. BioSyst., 11:86-96, 2015 doi:10.1039/C4MB00328D
Download: Abstract

Graded dominance and related graded properties of fuzzy connectives Fuzzy Sets and Systems

Author(s): Libor Behounek, Ulrich Bodenhofer, Petr Cintula, Susanne Saminger-Platz, Peter Sarkoci
Published: Fuzzy Sets and Systems, 262:78-101, 2015 doi:10.1016/j.fss.2014.04.025

Konferenzen

ELU-Networks - Fast and Accurate CNN Learning on ImageNet ICCV

Author(s): Martin Heusel, Djork-Arné Clevert, Günter Klambauer, Andreas Mayr, Karin Schwarzbauer, Thomas Unterthiner, Sepp Hochreiter
Published: Poster at International Conference on Computer Vision (ICCV 2015), Santiago, Chile, December 13-16, 2015
Downdload: PDF

Rectified Factor Networks NIPS

Author(s): Djork-Arné Clevert, Andreas Mayr, Thomas Unterthiner, Sepp Hochreiter
Published: Conference Neural Information Processing Systems Foundation (NIPS 2015), Montreal, Canada, December 7-12, 2015
Downdload: PDFSupplement (PDF)

panelcn. MOPS reaches clinical standards as a CNV detection tool for targeted panel sequencing data ASHG

Author(s): Verena Haunschmid, Gundula Povysil, Julia Vogt, Katharina Wimmer, Günter Klambauer, Sepp Hochreiter
Published: Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2015), Baltimore, USA, October 6-10, 2015
Abstract: PDF

KeBABS: an R/Bioconductor package for kernel-based analysis of biological sequences ASHG

Author(s): Johannes Palme, Sepp Hochreiter, Ulrich Bodenhofer
Published: Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2015), Baltimore, USA, October 6-10, 2015
Abstract: PDF

PODKAT: a software package implementing the position-dependent kernel association test ASHG

Author(s): Ulrich Bodenhofer, Sepp Hochreiter
Published: Poster at Annual Meeting of the American Society of Human Genetics (ASHG 2015), Baltimore, USA, October 6-10, 2015
Abstract: PDF

Early Interbreeding between Ancestors of Humans, Neandertals, and Denisovans within Africa SMBE 

Author(s): Gundula Povysil, Sepp Hochreiter
Published: Poster at Annual Meeting of the Society for Molecular Biology and Evolution (SMBE 2015), Vienna, Austria, July 12-16, 2015
Abstract: PDF

Publikationen (non-peer-reviewed)

Toxicity Prediction using Deep Learning arXiv.org

Author(s): Thomas Unterthiner, Andreas Mayr, Günter Klambauer, Sepp Hochreiter
Published: arXiv.org, Mar 2015
Download: arXiv:1503.01445 [stat.ML]

Rectified Factor Networks arXiv.org

Author(s): Djork-Arné Clevert, Thomas Unterthiner, Andreas Mayr, Hubert Ramsauer, Sepp Hochreiter
Published: arXiv.org, Feb 2015
Download: arXiv:1502.06464 [cs.LG]